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Archive for the ‘CSCS’ Category

Escape response of small fish tested using a supercomputer

Sunday, May 13th, 2012

Small fish bend themselves into a ‘C’ shape before they flee from predators.

Observations have suggested that this shape helps them to abruptly put the greatest distance possible between themselves and their predators.

Petros Koumoutsakos, a professor at the Computational Science & Engineering Laboratory » at ETH Zurich, and two of his doctoral students, Mattia Gazzola and Wim Van Rees, tested this hypothesis for the first time using a supercomputer combining a three-dimensional flow simulation with an  evolutionary optimization algorithm.

The analysis showed that the more water is accelerated by the fish, the more they accelerated themselves. The created vortical structures play a lesser role in the escape process than had been assumed thus far. The fish use their entire body to escape (by means of the C-start), so that they can displace much larger volumes of water, to accelerating themselves.

These results can be applied for example to wind turbines and energy generation devices inspired by fish.

This simulation has been computed at CSCS Swiss National Supercomputing Centre. Read more about the simulation on the CSCS web pages »

Bibliography: Gazzola M, Van Rees WM & Koumoutsakos P: C-start: optimal start for larval fish, Journal of Fluid Mechanics (2012) 698, 5-18, DOI: http://dx.doi.org/10.1017/jfm.2011.558

Reminder: MPI-2.2, MPI 3.0 and PGAS workshop, May 23-25, Lugano

Thursday, May 10th, 2012

This is a reminder for the

Advanced Distributed Memory Parallel Programming: MPI-2.2, MPI-3.0 and PGAS

workshop to be held at CSCS in Lugano on  23-25 May, 2012.

The goal of this training workshop is to introduce MPI-2.2 performance critical topics and to provide an overview of MPI 3.0, MPI for hybrid computing and Partitioned Global Address Space (PGAS) languages, Coarray Fortran and Unified Paralell C (UPC). For lab sessions, Cray XK6, a massively parallel processing (MPP) platform with GPUs and a QDR InfiniBand cluster with Intel processors and GPUs will be targeted.

Attendees are encouraged to bring in their own applications and codes for the hands-on sessions. Representatives from MPI 3.0 forum and Cray PE will be present at the meeting for discussions and feedback.  There will be invited talks where presenters share their experiences and discuss issues in using MPI and PGAS on the CSCS systems.

Registration deadline: May 18, 2012.

Event and registration details are available here »

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CSCS Call for Proposals 2012 – Allocation period starting on 1 October 2012

Tuesday, May 8th, 2012

This is a reminder for the next call of proposals at CSCS.

If you wish to be considered for the allocation period starting on 1 October 2012, then you need to submit your production project proposal no later than

Friday, 11 May 2012 at 18:00  (deadline).

Please make sure that you have an active username and password so that you can download a submission form.

All details for the proposals submissions are available here »

Slidecast: Data staging for in-situ processing and parallel IO/Coupling of HPC applications, John Biddiscombe

Wednesday, April 25th, 2012

John Biddiscombe and Jerome Soumagne presented at the last HPC Advisory Council workshop in Lugano techniques for data staging for in-situ processing and parallel IO/Coupling of HPC applications:

Parallel IO is used by HPC applications to quickly export data to disk, but the time/space taken to save and reload the results for post-processing is often prohibitive and so data-staging is emerging as a necessary and convenient method of holding data temporarily so that reduction operations can take place using post-processing tools. In this talk we discuss staging methods/libraries and how they have been used at CSCS for coupling of simulation and analysis for computational steering, and the future developments planned to cope with the ever growing size of data produced by simulations.

Solving the Mystery of Neanderthal Man in the Supercomputer

Monday, April 16th, 2012

CSCS is reporting on how supercomputers can explain why Homo neanderthalensis disappeared about 15,000 years ago. At that time modern humans, Homo sapiens, came to Europe and Homo neanderthalensis disappeared for good. Now the supercomputer is to assess which of the current hypotheses can explain their extinction.

Neanderthals were used to a cool climate, but still died out during the peak of the last ice age. (Image: Homo Neanderthalensis - Homo Sapiens: A Portrait. Stefan Auf der Maur, Marcia S. Ponce de Leon, Christoph P.E. Zollikofer, 2008)

20,000 to 200,000 years before our time, with Neanderthal man and modern man, at least two types of hominid were alive on Earth at the same time. Whereas modern humans in Africa and Neanderthals in Europe occurred separately from one another, in the Near East Homo sapiens and Homo neanderthalensis lived alongside one another for around 100,000 years. Just why the Neanderthals suddenly died out more than 20,000 years ago remains unexplained to this day.

Christoph Zollikofer, Professor of Anthropology at the University of Zurich is developing with the help of CSCS simulations that could give an explication.

Read the article on the pages of CSCS »